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Info in pdb
Specific sequence
Specific 2nd structure
Glycoprotein 3D structure
Structural search
Glycan linkages available in the SAGS database
Search at all levels
Linkage type:
Asn-GalNAc
Asn-Glc
Asn-GlcNAc
Asn-Man
Gal-Gal
GalNAc-GalNAc
Glc-Fuc
Glc-Gal
Glc-Glc
Glc-Man
GlcNAc-Fuc
GlcNAc-Gal
GlcNAc-GalNAc
GlcNAc-Glc
GlcNAc-GlcNAc
GlcNAc-Man
Man-Gal
Man-Glc
Man-GlcNAc
Man-Man
Man-Xyl
Xyl-Man
Search at all levels by conformer
Linkage type:
Gal
GalNAc
Glc
GlcNAc
Man
Xyl
α
β
1 -
2
3
4
6
Fuc
Gal
GalNAc
Glc
GlcNAc
Man
Xyl
Search by location
Linkage type:
Gal-Gal
GalNAc-GalNAc
Glc-Fuc
Glc-Gal
Glc-Glc
Glc-Man
GlcNAc-Fuc
GlcNAc-Gal
GlcNAc-GalNAc
GlcNAc-Glc
GlcNAc-GlcNAc
GlcNAc-Man
Man-Gal
Man-Glc
Man-GlcNAc
Man-Man
Man-Xyl
Xyl-Man
Location in tree:
select distinct A.branch from glyII_topo2 as A, gly_dictionary as B, gly_dictionary as C where A.resName2=B.db_name and A.resName1=C.db_name and C.name='Gal' and B.name='Gal' order by branch
03332233
04432233
Example
(
Man α1-2 Man
on branch 6, branch 6):
Linkage:
Man-Man
Location:
044662